Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTGCTCCTTCAGGTCTGCTGCTGCAT
.((((((.((((..((((((.&))))))..........)))).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001202435
GeneSymbolSCN1A
Binding site9057,9085
Score0.846
Seed1
Au0.515
Energy-21.7
Binding len28
Me-8.253
Phylopstem4.5444425
Phylopflank3.9660165417499993
Longest consecutive pairings6
Position of longest consecutive pairings22
Pairings in 3prime end6
Position3UTR
2D Structure