Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATCTTGGCAGCCCCACAACCACAGCATCAGGGCAGCTGCAGC
((((((((((((((((..(((&.)))..))))))...........)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001204419
GeneSymbolRGS6
Binding site4235,4277
Score0.846
Seed1
Au0.382
Energy-26.6
Binding len34
Me-3.938
Phylopstem0.24935751481481483
Phylopflank-0.15327167000000005
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure