Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&TCTGCTTGGCACTACAGTCATAAATAGAAAACACTGTGTGTGCTCAGGG
.(((((((((((..((......&.))..))))))).)))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001204961
GeneSymbolPBX1
Binding site3939,3988
Score0.923
Seed1
Au0.544
Energy-18.6
Binding len18
Me-5.939
Phylopstem-0.08549999999999998
Phylopflank-0.13967499999999997
Longest consecutive pairings7
Position of longest consecutive pairings6
Pairings in 3prime end2
Position3UTR
2D Structure