Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACGAAACAGCTGTAGAGATGAAAACAGGCTGCAGA
((((((((((((((((...((&))...)))))))).............)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001205228
GeneSymbolSORT1
Binding site2734,2769
Score0.923
Seed1
Au0.426
Energy-19.2
Binding len35
Me-3.938
Phylopstem0.39332244137931033
Phylopflank0.6860891199999998
Longest consecutive pairings8
Position of longest consecutive pairings22
Pairings in 3prime end5
Position3UTR
2D Structure