Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGCCAGGACCCTCAGGGTAAGCTGGCAGCAGGCTCTGCAGCTGCAC
.(((((((((((((((..(((&.))).)))))......)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001205294
GeneSymbolCACNA1E
Binding site15005,15054
Score0.846
Seed1
Au0.397
Energy-22.8
Binding len27
Me-3.793
Phylopstem-0.4590970761904761
Phylopflank-0.2001314525
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
Position3UTR
2D Structure