Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTCAGAGCCCTGCAGCTGTAT
.(((((((((((((.(.((((&)))).).))))..))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001206999
GeneSymbolCIT
Binding site5398,5421
Score0.808
Seed1
Au0.515
Energy-24.4
Binding len23
Me-4.529
Phylopstem5.209798866666666
Phylopflank4.7648771824999985
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure