Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTGCTGATGCAGCTGCGGC
(((((((((((...((((((.&))))))...))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001207034
GeneSymbolRNF40
Binding site1265,1286
Score0.923
Seed1
Au0.382
Energy-27.1
Binding len21
Me-9.43
Phylopstem1.1940741909090908
Phylopflank2.44911104375
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure