Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTACAGCTGCAGAAATATTGTAT
.(((((((((((((((.((((&)))))))))))))).....))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001230
GeneSymbolCASP10
Binding site4353,4378
Score0.923
Seed1
Au0.441
Energy-21.0
Binding len25
Me-3.793
Phylopstem0.17480825
Phylopflank-0.017515700000000002
Longest consecutive pairings14
Position of longest consecutive pairings11
Pairings in 3prime end7
Position3UTR
2D Structure