Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGTGGCGGCCGCGTCTTCTGCGT
.(((((.(((((((((..(((&)))...)))))))))....))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001242784
GeneSymbolHLCS
Binding site188,213
Score0.846
Seed0
Au0.353
Energy-21.5
Binding len25
Me-5.337
Phylopstem0.20096344444444447
Phylopflank0.21554467250000003
Longest consecutive pairings9
Position of longest consecutive pairings10
Pairings in 3prime end6
Position5UTR
2D Structure