Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTATGCACTACTGTAGCTAGGAAA
((.(((((((((((((((((.&))).))))..))))))))).).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001242858
GeneSymbolPRKACB
Binding site4225,4250
Score0.923
Seed0
Au0.691
Energy-18.5
Binding len25
Me-5.495
Phylopstem2.223123666666666
Phylopflank1.5527866574999996
Longest consecutive pairings9
Position of longest consecutive pairings6
Pairings in 3prime end7
Position3UTR
2D Structure