Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCCCAACCTAGCCCAGCTGCAGC
(((((((((.((((...((((&.))))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001243198
GeneSymbolHIP1
Binding site2653,2677
Score0.827
Seed1
Au0.382
Energy-22.9
Binding len19
Me-6.149
Phylopstem-0.7821957777777778
Phylopflank-0.18351583
Longest consecutive pairings17
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure