Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTCACAGCCGCGTTGTC
..(((((.((((((((((((.&)))).))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001243342
GeneSymbolCCDC40
Binding site3368,3387
Score1.0
Seed0
Au0.5
Energy-23.1
Binding len19
Me-7.271
Phylopstem-0.2997470538461539
Phylopflank-0.31570302187500004
Longest consecutive pairings13
Position of longest consecutive pairings1
Pairings in 3prime end7
Position3UTR
2D Structure