Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCGAGGGCAGCCGCGGCCCTGTGGA
((((((((((((((((.....&.)))))))))))..))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001330432
GeneSymbolSANBR
Binding site131,156
Score1.0
Seed1
Au0.412
Energy-22.0
Binding len20
Me-3.938
Phylopstem1.022627711111111
Phylopflank1.0416403007499997
Longest consecutive pairings11
Position of longest consecutive pairings8
Pairings in 3prime end3
Position5UTR
2D Structure