Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTGCAGTCAAAAGTTTCGTTCTTTTTGCCCAGGCTGGAGTGCAAT
(((((.((.((((((((((((&))))))))...........................)))).))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001251877
GeneSymbolUSP4
Binding site710,758
Score0.808
Seed0
Au0.5
Energy-19.0
Binding len48
Me-6.895
Phylopstem-0.29009617948717936
Phylopflank-0.21442656249999997
Longest consecutive pairings8
Position of longest consecutive pairings40
Pairings in 3prime end8
PositionCDS
2D Structure