Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAGGACTACGACCTCAGCCAGCTGCAGC
(((((((((((((((((....&.)))))))...)).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001252339
GeneSymbolCDH4
Binding site2434,2464
Score0.846
Seed1
Au0.324
Energy-22.4
Binding len23
Me-3.938
Phylopstem5.413758857142857
Phylopflank3.7994451067624997
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure