Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&AAATTTCAAAACTGGCACATTGTAAACTGCATATGCATTTGCCAGGTA
((((((((((((((((......&.))))))))...............)))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001253
GeneSymbolCDC5L
Binding site5019,5067
Score0.923
Seed1
Au0.559
Energy-20.4
Binding len33
Me-3.938
Phylopstem0.0877276935483871
Phylopflank-0.04079070124999992
Longest consecutive pairings8
Position of longest consecutive pairings24
Pairings in 3prime end2
Position3UTR
2D Structure