Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTATAACTGTTATTAAATACCAAATCAAATAATATAAAAGCTGTAAC
(((((((((((((((((((..&)))))))))))............................)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001254943
GeneSymbolCCDC88A
Binding site9244,9292
Score0.846
Seed1
Au0.765
Energy-20.1
Binding len48
Me-3.938
Phylopstem0.1928168021276596
Phylopflank0.17823496874999992
Longest consecutive pairings11
Position of longest consecutive pairings37
Pairings in 3prime end6
Position3UTR
2D Structure