Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTCCAAGGCTTCCCCAAACCCCTAAGCAGCCGCAGAAGCGC
.(((..((((((((((.(((.&.)))..))))))))))..))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001256339
GeneSymbolNKX3-1
Binding site110,153
Score0.923
Seed0
Au0.368
Energy-24.2
Binding len22
Me-9.813
Phylopstem0.58639972
Phylopflank0.4038000427500001
Longest consecutive pairings10
Position of longest consecutive pairings6
Pairings in 3prime end6
PositionCDS
2D Structure