Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCAGACAACTGCAGAATGTAGA
(((((.((((((((((..(((&)))..))))))))))..))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001256417
GeneSymbolNBPF3
Binding site2818,2841
Score1.0
Seed0
Au0.529
Energy-23.0
Binding len23
Me-5.839
Phylopstem0.37438610000000005
Phylopflank0.05590496249999999
Longest consecutive pairings10
Position of longest consecutive pairings8
Pairings in 3prime end6
Position3UTR
2D Structure