Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCCAAGGGCTGTGGCTGA
...(((((((((((.(..((.&))..).))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001256727
GeneSymbolUSP39
Binding site1707,1725
Score0.846
Seed0
Au0.485
Energy-18.3
Binding len18
Me-7.25
Phylopstem-0.7614924545454546
Phylopflank0.8119754518749996
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure