Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCATGCTGTCAAGCTGCAGA
(((((((((((((....((((&))))...)))))..)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001256735
GeneSymbolSSBP2
Binding site3257,3280
Score0.923
Seed1
Au0.529
Energy-20.6
Binding len23
Me-5.763
Phylopstem0.2349766
Phylopflank0.080311
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end4
Position3UTR
2D Structure