Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACCCTGTTCAGCTGATCCCAACTACCATGGCAGCTGCT
..((((((((.((.(((.((.&.))...))).)).)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001261414
GeneSymbolSOX5
Binding site1388,1430
Score0.808
Seed1
Au0.412
Energy-22.1
Binding len22
Me-8.639
Phylopstem-0.2919763875
Phylopflank-0.2075878900000001
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure