Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&ATGTGCAGCTGGTATGATAGAAGGAAATTGGGAAAACTTGTATGCTAGGC
.((((((((((((.((......&.)))))))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001265609
GeneSymbolTRAK1
Binding site4436,4486
Score1.0
Seed1
Au0.544
Energy-19.6
Binding len16
Me-4.65
Phylopstem-0.3842542841666667
Phylopflank-0.005607192624999986
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end2
Position3UTR
2D Structure