Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTGCTAAGGATGCCCAGCGGCAGCTCACAGCCGAGCTGCGT
.(((((((.(((((((.((.(&.).)).)))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001265609
GeneSymbolTRAK1
Binding site1018,1060
Score0.846
Seed1
Au0.382
Energy-23.6
Binding len21
Me-4.85
Phylopstem5.359493428571429
Phylopflank4.959198036249999
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure