Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCCGGGCGCTCAGCTGGCCCGGGCGATCAGTGGGTGACCGCGGCTGCGAG
((((((((((((((.......&.)))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001270467
GeneSymbolSOCS2
Binding site254,305
Score0.923
Seed1
Au0.338
Energy-26.3
Binding len16
Me-4.906
Phylopstem-0.6362450714285715
Phylopflank-0.05700197625000003
Longest consecutive pairings14
Position of longest consecutive pairings1
Pairings in 3prime end1
Position5UTR
2D Structure