Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATCTTAAGCAACCGCCTTACGCAGTCAATGGGCTGA
...((((((((((((((((((&)))))..))))))))...............))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001270523
GeneSymbolOTX2
Binding site297,333
Score0.846
Seed0
Au0.485
Energy-19.4
Binding len36
Me-6.515
Phylopstem2.763103914285714
Phylopflank1.9971493812499999
Longest consecutive pairings8
Position of longest consecutive pairings21
Pairings in 3prime end8
PositionCDS
2D Structure