Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCGAACACTGCAGCAGTCCTGATTTGCGAA
((((((((((((.(((..((.&))..))))))))))..........))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001270934
GeneSymbolJAKMIP2
Binding site1238,1268
Score0.923
Seed1
Au0.588
Energy-19.1
Binding len30
Me-5.227
Phylopstem0.08736520454545456
Phylopflank-0.09369565124999998
Longest consecutive pairings10
Position of longest consecutive pairings16
Pairings in 3prime end5
PositionCDS
2D Structure