Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTTCAGACCCAGTTGCAC
.((((((((.((((..(((((&)))))...)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001271457
GeneSymbolCOLCA2
Binding site252,273
Score0.846
Seed1
Au0.456
Energy-22.7
Binding len21
Me-6.004
Phylopstem5.415915
Phylopflank3.2798893737499992
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end6
Position5UTR
2D Structure