Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTCACACGCCCAGTACAGCTGCT
..(((((((.((((((.(((.&))).))).))).....))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001271457
GeneSymbolCOLCA2
Binding site681,705
Score0.923
Seed1
Au0.412
Energy-18.9
Binding len24
Me-6.2
Phylopstem0.28423057142857144
Phylopflank1.0495278524999998
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure