Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GTCTGGAAATGCTGCCGGGA
.(((((((.....(.(((((..&))))).).....))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001271741
GeneSymbolCSNK1A1
Binding site2958,2978
Score0.821
Seed1
Au0.662
Energy-15.9
Binding len20
Me-14.288
Phylopstem2.715603
Phylopflank3.258414583625
Longest consecutive pairings7
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure