Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCTCCTGCTGCTGCC
..(((((.((((..((.((((&))))))..)))).))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001272066
GeneSymbolSHISA5
Binding site489,508
Score0.846
Seed0
Au0.426
Energy-20.7
Binding len19
Me-9.417
Phylopstem-0.09340569999999997
Phylopflank0.48070387825000005
Longest consecutive pairings6
Position of longest consecutive pairings13
Pairings in 3prime end6
PositionCDS
2D Structure