Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCTCCTGCTGCTGCC
..(((((.((((..((.((((&))))))..)))).))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001272082
GeneSymbolSHISA5
Binding site219,238
Score0.923
Seed0
Au0.426
Energy-20.7
Binding len19
Me-9.417
Phylopstem1.6400366000000002
Phylopflank0.23902221712500005
Longest consecutive pairings6
Position of longest consecutive pairings13
Pairings in 3prime end6
PositionCDS
2D Structure