Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGGCAACTGTGAGTCCCTGCT
..((((((((((((((.((((&)))).)))))))).))...)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001272082
GeneSymbolSHISA5
Binding site1503,1527
Score0.846
Seed1
Au0.456
Energy-19.7
Binding len24
Me-4.957
Phylopstem2.2375879444444444
Phylopflank2.0903585
Longest consecutive pairings8
Position of longest consecutive pairings11
Pairings in 3prime end7
Position3UTR
2D Structure