Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTGAGGCTGTAGCG
.....(((((((((...((((&))))..))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001276348
GeneSymbolC1orf100
Binding site879,895
Score0.923
Seed0
Au0.515
Energy-18.4
Binding len16
Me-14.634
Phylopstem0.4142222222222222
Phylopflank-0.18
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure