Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTCGGAAAGTGCTCCTGCGGCTGTAT
.(((((((((((..(((((((&)))).......)))..))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001277
GeneSymbolCHKA
Binding site627,655
Score0.923
Seed1
Au0.471
Energy-22.7
Binding len28
Me-5.939
Phylopstem-0.05632334545454547
Phylopflank-0.20069919999999997
Longest consecutive pairings11
Position of longest consecutive pairings1
Pairings in 3prime end7
PositionCDS
2D Structure