Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&TACAGCCGCAAGGAGGAGGAGTGCCAGGCAGGGGCTGCC
..(((((((((((((((....&)))))))))).......................))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278216
GeneSymbolCDK5RAP3
Binding site1170,1209
Score0.846
Seed1
Au0.353
Energy-21.6
Binding len39
Me-4.957
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings10
Position of longest consecutive pairings29
Pairings in 3prime end4
Position5UTR
2D Structure