Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCTAGCAATGGATACGTGCAAACATGTTGGGCAGCTGCAGCTTGCT
..((((((((((((((.....&.)))))))))))).)).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278393
GeneSymbolUSP44
Binding site328,374
Score0.923
Seed1
Au0.485
Energy-23.7
Binding len17
Me-4.957
Phylopstem0.3493985133333333
Phylopflank0.10443392937499998
Longest consecutive pairings12
Position of longest consecutive pairings4
Pairings in 3prime end3
PositionCDS
2D Structure