Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTTACTGGAGTAGGAAGTTTTATGCAGTCACAGGCAGCTGCAGTTGCGAT
(((((((((((((((((((((&)))))..............................)))))))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278481
GeneSymbolSUPT20H
Binding site2282,2334
Score0.846
Seed1
Au0.515
Energy-27.0
Binding len52
Me-3.938
Phylopstem5.761686003921568
Phylopflank5.1673904
Longest consecutive pairings16
Position of longest consecutive pairings1
Pairings in 3prime end8
PositionCDS
2D Structure