Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&GTCTACCTAAATTCTTTCTGCCTTCTATAACAATTGTATGCTCAGT
..(((((((((((((((((...&.)))))....))))))))).))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001278549
GeneSymbolPDK1
Binding site6544,6590
Score0.846
Seed1
Au0.75
Energy-17.7
Binding len24
Me-4.957
Phylopstem0.056047409090909106
Phylopflank0.05901285624999998
Longest consecutive pairings9
Position of longest consecutive pairings5
Pairings in 3prime end5
Position3UTR
2D Structure