Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATCTTGCAGCTGCAGGCATCCCCCCGGTCTGCT
..(((((((((((((((((((&))))))))))))))).............)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278549
GeneSymbolPDK1
Binding site6356,6389
Score1.0
Seed1
Au0.485
Energy-24.7
Binding len33
Me-4.957
Phylopstem0.18254356249999998
Phylopflank0.10898013875000001
Longest consecutive pairings15
Position of longest consecutive pairings18
Pairings in 3prime end8
Position3UTR
2D Structure