Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTCCATCCAGCTGCAGC
(((((((((.(((.(.(((((&)))))).)))))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278615
GeneSymbolPCDH1
Binding site2152,2172
Score1.0
Seed1
Au0.397
Energy-21.9
Binding len20
Me-6.27
Phylopstem0.0
Phylopflank0.0
Longest consecutive pairings12
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure