Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCAGACAGCCGACCAGCTGCGC
.(((((((((((((((..((.&))..)))))))..)))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001278618
GeneSymbolPTPN1
Binding site836,858
Score0.846
Seed1
Au0.397
Energy-25.9
Binding len22
Me-3.793
Phylopstem3.562381976470588
Phylopflank4.691031259999999
Longest consecutive pairings8
Position of longest consecutive pairings1
Pairings in 3prime end5
PositionCDS
2D Structure