Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCAGGGACCCTCAGCTGCAGA
(((((((((.((((.(..(((&))).).))))..))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001282169
GeneSymbolVPS36
Binding site2673,2695
Score0.846
Seed1
Au0.382
Energy-21.6
Binding len22
Me-5.916
Phylopstem-0.15498431111111108
Phylopflank0.4654722324999998
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end5
Position3UTR
2D Structure