Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CCTTACGATCTAGAGTATAAGCTGCGC
.(((((((((((((((((((.&))))))))))....))...))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001282169
GeneSymbolVPS36
Binding site4378,4405
Score0.923
Seed1
Au0.559
Energy-21.3
Binding len27
Me-3.793
Phylopstem-0.48960615384615386
Phylopflank-0.24553075000000002
Longest consecutive pairings10
Position of longest consecutive pairings17
Pairings in 3prime end7
Position3UTR
2D Structure