Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCTTACAATTGAGCAGCTATGGAAGATCTCAACAGCAAC
(((((((((((((((((((((&)))))))))))..))))))................)))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001282337
GeneSymbolPLS3
Binding site261,301
Score1.0
Seed1
Au0.603
Energy-22.9
Binding len40
Me-3.938
Phylopstem1.8852561641025642
Phylopflank2.2769918749999993
Longest consecutive pairings11
Position of longest consecutive pairings29
Pairings in 3prime end8
Position5UTR
2D Structure