Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ATAGCCGCCGGGTCTGCAAA
((((((((((((((((.....&))))))))..)).)))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001282546
GeneSymbolSTK40
Binding site3411,3431
Score1.0
Seed1
Au0.441
Energy-20.0
Binding len20
Me-3.938
Phylopstem5.040437210526315
Phylopflank3.4995396124999996
Longest consecutive pairings8
Position of longest consecutive pairings12
Pairings in 3prime end3
Position3UTR
2D Structure