Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&ACCTGCCGCGGCGTCTCGTGGCCCAGCTGCATCTGCTGCAGA
(((((((((((((((...(((&.)))))))))))...))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001282677
GeneSymbolPEX1
Binding site173,215
Score0.846
Seed1
Au0.412
Energy-22.9
Binding len23
Me-4.171
Phylopstem0.5412887222222221
Phylopflank0.25979324000000004
Longest consecutive pairings11
Position of longest consecutive pairings11
Pairings in 3prime end5
PositionCDS
2D Structure