Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&GCCGGCTTCGGGAGGCGCCGCGGCACTTACTGGTTTGCGAG
((((((((((((.(((.....&.))))))))))...........))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286133
GeneSymbolRPP40
Binding site48,89
Score0.846
Seed1
Au0.382
Energy-18.1
Binding len28
Me-5.227
Phylopstem3.851677608695652
Phylopflank2.30363268275
Longest consecutive pairings10
Position of longest consecutive pairings17
Pairings in 3prime end3
PositionCDS
2D Structure