Details of Duplex


2D Structure dot-bracket from RNAduplex"
ACCTGGCATACAATGTAGATTT&CTACTTTGTGCCGGGC
.(((((((((....((((....&))))..))))))))).
Details
MiRNAhsa-miR-221-5p
RefseqIDNM_001286402
GeneSymbolCIITA
Binding site1967,1983
Score0.923
Seed1
Au0.382
Energy-18.4
Binding len16
Me-12.111
Phylopstem2.5228418888888893
Phylopflank0.7626028649999999
Longest consecutive pairings9
Position of longest consecutive pairings1
Pairings in 3prime end4
PositionCDS
2D Structure