Details of Duplex


2D Structure dot-bracket from RNAduplex"
TTGCAGCTGCGGTTGTAAGGT&CTTGCGAGGTACCTGAAGCGGCTGCAGC
(((((((((((((((((((..&))))))....)))....)))))))))).
Details
MiRNAhsa-miR-5047
RefseqIDNM_001286402
GeneSymbolCIITA
Binding site2500,2528
Score0.846
Seed1
Au0.309
Energy-23.0
Binding len28
Me-3.938
Phylopstem1.547307111111111
Phylopflank0.9478912975
Longest consecutive pairings10
Position of longest consecutive pairings1
Pairings in 3prime end6
PositionCDS
2D Structure